Deliverables


Work plan

EvoEvo aims at achieving its objectives through a workplan containing 6 workpackages: WP6 management; WP1 in vivo experiments; WP2 model design; WP3 in silico experiments; WP4 computational framework design; WP5 applications. Figure herebelow illustrates the essential characteristics of the project and the way their declination in the workplan ensures that the global objectives are achieved.
EvoEvo workplan is based on three principles that guaranty that the biological foundations of EvoEvo are effectively and efficiently transmitted to the computation application through modelling and framework development steps. The three principles are the following:

Principle 1 A route from evolutionary biology (WP1) to artificial evolution (WP4) through modelling (WP2).
Principle 2 Parallelism between in vivo experimental evolution (WP1) and in silico experimental evolution (WP3).
Principle 3 Applicative targets (WP5) that will make profit from both the computational framework designed in WP4 and from EvoEvo knowledge produced in WP3.
wp
EvoEvo work plan overview.

Select the work package


Deliverable 1.6 (Analysis of phenotypic innovation – part 2)

D1.6 – Analysis of phenotypic innovation (part 2): Phenotypic innovation: identification of hub genes that may be targets of viral […]

11.10.2016

Deliverable 1.5 (Analysis of evolvability – part 2)

D1.5 – Analysis of evolvability (part 2): Evolvability: determination of viral adaptive constraints; genetic characterization of the restructuration of bacterial […]

11.10.2016

Deliverable 1.4 (Analysis of phenotypic innovation – part 1)

D1.4 – Analysis of phenotypic innovation (part 1): Phenotypic innovation: viral host transcriptome and bacterial evolution experiments with changes in […]

25.03.2016

Deliverable 1.3 (Analysis of evolvability – part 1)

D1.3 – Analysis of evolvability (part 1): evolvability: correlation between viral evolvability and robustness; correlation between rates of virus evolution […]

25.03.2016

Deliverable 1.2 (Analysis of robustness in TEV and E. coli strains)

D1.2 – Analysis of robustness in TEV and E. coli: identification of molecular bases in both viral and bacterial models; […]

25.03.2016

Deliverable 1.1 (TEV and E. coli strains for robustness analysis)

D1.1 – TEV and E. coli strains for robustness analysis: Production of TEV populations with diverse degrees of mutational robustness […]

27.11.2014


Deliverable 2.8 (Integrated evolutionary model source code)

D2.8 – Integrated evolutionary model: Documented runnable integrated evolutionary model suitable for running in silico experiments. This model should follow […]

23.05.2015

Deliverable 2.6 (Realistic-network model source code)

D2.6 – Realistic-network model: Documented runnable realistic-network model suitable for running in silico experiments. This model should follow the choices […]

23.05.2015

Deliverable 2.4 (Population model source code)

D2.4 – Population model: Documented runnable population model suitable for running in silico experiments. This model should follow the choices […]

23.05.2015

Deliverable 2.7 (Integrated evolutionary model specs)

D2.7 – Description of the modeling choices for the integrated model. This model should include most of the choices made […]

19.02.2015

Deliverable 2.2 (Genome-network model source code)

D2.2 – Genome-network model: Documented runnable genome-network model suitable for running in silico experiments. This model should follow the choices […]

10.12.2014

Deliverable 2.5 (Realistic network model specs)

D2.5 – Specifications of the realistic network model: Description of the modeling choices for the realistic genetic/metabolic network model. This […]

26.11.2014

Deliverable 2.3 (Population model specs)

D2.3 – Specifications of the population model: description of the modeling choices for the population level model. This model should […]

24.07.2014

Deliverable 2.1 (Genome-network model specs)

D2.1 – Specifications of the genome-network model: description of the modeling choices for the genome-network integrated model. This model should […]

04.07.2014


Deliverable 3.4 – Evolution of open-endedness

D3.4 – Evolution of open-endedness; Mechanisms and consequences: A report describing how open-endedness evolves in the model and its consequences […]

28.10.2016

Deliverable 3.3 – Evolution of evolvability

D3.3 – Evolution of evolvability; Mechanisms and consequences: A report describing how evolvability is indirectly selected in the model and […]

09.10.2016

Deliverable 3.2 – evolution of robustness

D3.2 – Evolution of robustness; Mechanisms and consequences: A report describing how robustness is indirectly selected in the model and […]

08.10.2016

Deliverable 3.1 – Evolution of variability

D3.1 – Evolution of variability; Mechanisms and consequences: A report describing how variability is indirectly selected in the model and […]

03.11.2015


Deliverable 4.5 (Reflective applications)

D4.5 – Reflective application: A report containing a description of a CoSMoS approach “Simulation Experiment”: a description and evaluation of […]

07.11.2016

Deliverable 4.4 (Computational reflective run-time platform)

D4.4 – Computational reflective run-time platform: A calibrated, tested and documented reflective implementation of the platform specification (D4.2), suitable for […]

07.11.2016

Deliverable 4.3 (Computational run-time platform)

D4.3 – A calibrated, tested and documented implementation of the platform specification (D4.2), suitable for developing the evoevo component of […]

15.09.2016

Deliverable 4.2 (Model requirements specification)

D4.2 – Computational model requirements specification: A report containing a description of a CoSMoS approach “Platform Model”: a specification of […]

11.05.2015

Deliverable 4.1 (Computational meta-model definition)

D4.1 – Computational meta-model definition: A report containing a description of a CoSMoS approach “Meta-Model”: a definition of the meta-model […]

11.05.2015


Deliverable 5.2 (Impact obtained from EvoEvo mechanisms on evolution of a hardware personal companion)

D5.2 – Impact obtained from EvoEvo mechanisms on evolution of a hardware personal companion: A report on the development and […]

31.10.2016

Deliverable 5.1 (impact obtained from EvoEvo mechanisms on data stream cluster analysis)

D5.1 – Impact obtained from EvoEvo mechanisms on data stream cluster analysis: A report on the development and results of […]

26.10.2016


Deliverable 6.8 (EvoEvo final report)

D6.8 – Final report: Final report of the EvoEvo project. Download

28.11.2016

Deliverable 6.6 (Program of the interdisciplinary workshop)

D6.6 – Program of the interdisciplinary dissemination workshop that will be organized at the end of the project to disseminate […]

07.09.2016

Deliverable 6.5 (Mid-term dissemination report)

D6.5 – Mid-term dissemination report. This report should prepare the final dissemination workshop, select conferences where to present the results […]

23.05.2015

Deliverable 6.2 (project communication media)

D6.2 – Project communication media: leaflet ans slideshow describing the project objectives. Download

08.07.2014

Deliverable 6.1 (project website)

D6.1 – Project website: public website of the project. Private website for collaborative work. Download

08.07.2014

funding
EvoEvo is an Information and Communication Technologies initiative funded by the European Commission under FP7.
Background image - Young Tree, 1932, Paul Klee